Thursday, May 25, 2006
Saturday, January 28, 2006
Bioinformatics Links
Bioinformatics Links: "
NCBI ,REACTOME , PHARMAGKB , ENSEMBL , EBI , REPEATMASKER , Mapviewer(Human)
Entrez gene ( Download gene sequence), IN SILICO PCR , E-PCR( Test Your Primers in the PC)
DNA folding (mfold) (Prediction of DNA/RNA secondary structure)
BLAST against -------?Human , Chimp, Mouse , Zebrafish
BlastN ( Sensitive search suitable for queries shorter than 3000 bp),BlastN (upto 25 bp)
Swiss-Prot(ExPASy)
Genecard (GeneCards is a database of human genes, their products and their involvement in diseases.)
PDB(the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data)
OMIM(This database is a catalog of human genes and genetic disorders)
DNA Methylation Database , Genetic Association Database
GC- Content (calculate the GC content and melting temperature) ?
? Web nidhan.sitesled.com
Chi-square Test Calculator; Human genome Segmental duplication database
SNP BlastBlast against dbSNP database to retrieve SNP location.
HAPMAPThe International HapMap Project is a? a public resource that will help researchers find genetic polymorphisms associated with human disease and response to pharmaceuticals.
dbSNPRepository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms; NCBI collaboration with NHGRI
MutDBThe goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information.
PupasViewPupasView takes a single gene identifier as input and reports SNPs that have the potential to affect phenotype. In addition to looking for potential amino acid changes, PupaSNP also searches for SNPs with the potential to affect proper transcription, such as those in intron/exon boundari"
NCBI ,REACTOME , PHARMAGKB , ENSEMBL , EBI , REPEATMASKER , Mapviewer(Human)
Entrez gene ( Download gene sequence), IN SILICO PCR , E-PCR( Test Your Primers in the PC)
DNA folding (mfold) (Prediction of DNA/RNA secondary structure)
BLAST against -------?Human , Chimp, Mouse , Zebrafish
BlastN ( Sensitive search suitable for queries shorter than 3000 bp),BlastN (upto 25 bp)
Swiss-Prot(ExPASy)
Genecard (GeneCards is a database of human genes, their products and their involvement in diseases.)
PDB(the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data)
OMIM(This database is a catalog of human genes and genetic disorders)
DNA Methylation Database , Genetic Association Database
GC- Content (calculate the GC content and melting temperature) ?
? Web nidhan.sitesled.com
Chi-square Test Calculator; Human genome Segmental duplication database
SNP BlastBlast against dbSNP database to retrieve SNP location.
HAPMAPThe International HapMap Project is a? a public resource that will help researchers find genetic polymorphisms associated with human disease and response to pharmaceuticals.
dbSNPRepository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms; NCBI collaboration with NHGRI
MutDBThe goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information.
PupasViewPupasView takes a single gene identifier as input and reports SNPs that have the potential to affect phenotype. In addition to looking for potential amino acid changes, PupaSNP also searches for SNPs with the potential to affect proper transcription, such as those in intron/exon boundari"
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